The phrase "assign software" is correct and usable in written English.
It can be used when referring to the act of allocating or distributing software to users or systems.
Example: "The IT department will assign software to all new employees to ensure they have the necessary tools for their work."
Alternatives: "allocate software" or "distribute software".
The trimmed and barcode-binned sequence reads were used for HLA allele assignment to the field 3 and 4 levels by Sequence Alignment Based Assigning Software (SeaBass) (an in-house development of Tokai University, in preparation).
We previously reported the development and application of the SS-SBT method such as long ranged PCR system from promoter-enhancer to 3'UTR for the 11 classical HLA loci, A, B, C, DRB1, DRB3/4/5, DQA1, DQB1, DPA1 and DPB1, setting of NGS parameters, and automated NGS data processing system, Sequence Alignment Based Assigning Software (SeaBass).
We evaluated the ability of this assay together with Conexio Assign MPS software to define high resolution HLA alleles by sequencing 59 samples and examining the concordance between prior typing information and the GType Assay.
HLA-B alleles were assigned up to six digits with the help of ASSIGN 3.5 software.
Electropherograms were analysed by the Assign 3.5+ software (Conexio Genomics) using the IMGT/HLA database release 3.7.0.
HLA sequences from all four loci were analyzed using the Assign ATF software v1.0.2.45 (Conexio Genomics, Fremantle, Australia).
The sequences representing frequent and well-known alleles were analysed by the Assign 3.5 software (Conexio Genomics) and presented in Table 1.
We encourage all departments to consider assigning their software licensing to us so the university can maximize its purchasing power.
In addition, the STs were deposited into the Neisseria MLST database and the relationships with defined clonal complexes were automatically assigned by software in the database.
How do we assign responsibility for software, algorithms, and the resulting outputs?
