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The pol phylogenetic analysis could assign confident genotypes to 96.3% of samples (1006/1045), while subtype B and CRF01_AE accounted for 43.1% (450/1045) and 44.9% (469/1045) of the total number of samples respectively.
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Remarkably, the gene content of B. aphidicola is a subset of the E. coli K-12 genome [ 3, 5], allowing nearly all Buchnera gene products to be assigned confident functional assignments.
The success of two consecutive b-or y-type site-determining ions was required to assign a confident site [ 62].
On the contrary, multi-class CNVs that consisted of more than two clusters can assign highly confident CNV genotype.
The quantification efficiency (the percentage of identified peptides assigned a confident 14N/15N ratio) was dramatically different between the samples.
The assigned confidence of an edge was the number of networks in which the edge was present divided by 50, the rationale being that we are more confident about an edge if it appears in more networks.
We iteratively assigned the most confident positive instances called by our classifier into training cases and found that performance of the self-training became stable after 75 iterations and stopped further training.
We were unable to confidently assign specific functions to 10 of the confident structural predictions.
Nor can we be 100% confident in assigning differential US and euro zone economic outcomes to the impact of divergent monetary and fiscal policies, given the links between the two regions and the different institutional structures.
Many sub-cellular compartments are well documented in the nematode and we feel confident in assigning proteins to these specific regions.
Whilst we feel our best estimate model (423 kg) represents the most realistic created (Fig. 8), we are less confident in assigning a realistic range for body mass than with the other theropods.
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