Sentence examples for assign charges from inspiring English sources

So far several commonly used methods are available to assign charges.

The Restrained Electrostatic Potential (RESP) module within the Antechamber program in AmberTools was used to assign charges to the atoms using the Gaussian output.

The B-Raf (3SKC) and modeled human RIP3 structures were prepared with autodock tools to add the hydrogens and assign charges and saved as the pdbqt file format.

This version allows them to assign charges to each of these layers under the constraint that the total charge must be zero.

They also assign charges to the solid surface and inner-sphere complex layers based on bond valences and the expected covalency of the bonds, an exercise that shows the confusion caused by references to ionicity and covalency which are irrelevant to the application of the bond valence model.

Consider again Figure 2. Alongside the three-dimensional representation of the molecule, derived from the crystallographic experiment, there is a two-dimensional chemical diagram that displays molecular connectivity, bond types, assigned charges, and sometimes stereochemistry.

The CVFF and the force field assigned charges are used in all the simulations described below.

Electrostatic interactions are introduced by assigning charges to the polyelectrolyte blocks forming the micellar core.

First, the receptor model was prepared for docking by adding protons and assigning charges to ionizable side chains.

First, CVFF, PCFF, COMPASS, and UNIVERSAL with the force field assigned charges and the equilibration and Gasteiger charge rules are used to optimize the unit cell of l-alanine adopted from Cambridge Structural Database (CSD).

After assigning charges to each state, the individual rate constants take the form k=γ c k, where γ is the activity coefficient with absolute value of charge c of the corresponding enzyme substrate complex.