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The ARF is assigned as the default response id for the default background id of the specified source dataset; i.e. for most simple analyses, this command will assign the ARF as the first response of the first background dataset associated with the id.
A value of 1.0 was assigned as the default fitness.
The coefficient value of 1.0 was also assigned (as a default value in CFX) for particle particle collision simulation.
Both weight and top% range from 0 to 1, and 0 was assigned to nflank as default value accompanied with a maximum value of 10 in our calculation.
Step 1 (DEFAULT): In the voxel space, all grid points are assigned to DEFAULT as the initial state.
Step 6 (CAVITY): The grid points which remain as DEFAULT are re-assigned to CAVITY.
These include the assigned basic CID (BCID) and the assigned PMCID, as well as a default CID (usually 0) used during the original network entry.
The first species cluster was assigned as mammal group and the second species cluster for fishery group as default settings.
As for the prior p(C=1) of complexes, we assign a default value of 0.0001 which leads to good performance in cross validation experiments.
The parameters reqm and ε of the hydrogen bond acceptor were assigned by default.
In this study, we used "BGLR" package to implement BayesB model and adopted the default values for v and S. The parameter π was unknown and was assigned a weakly informative Beta prior π ~ Beta p0, π0), with π0 = 0.5 and P0 = 10 as default values (Perez and de los Campos 2014).
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