The phrase "assessed using the software" is correct and usable in written English.
You can use it when describing a process where an evaluation or analysis is conducted with the help of specific software.
Example: "The data was assessed using the software to ensure accuracy and reliability in the results."
Alternatives: "evaluated with the software" or "analyzed through the software."
Locus by locus cytonuclear disequilibrium was assessed using the software CNDWin [59], with 10,000 Markov Chain Monte Carlo repetitions.
The required patient number was assessed using the software R with a simulation of 9999 iterations.
In approach 1, OTUs were assessed using the software TaxonDNA 1.7 and the implemented 'Cluster' algorithm in SpeciesIdentifier [ 109].
The quantitative parameters were assessed using the software Scion Image (Scion Corporation, Maryland, USA) in anterior, posterior, medial and lateral views.
A burn-in of 10% was used and the convergence of all parameters assessed using the software TRACER (within the BEAST package).
The degree of fit of the POPEQ to the Rasch model was assessed using the software Winsteps [ 34] and the outfit and infit mean square residuals.
Dockings were assessed using the AutoDock4 software package [ 57, 58].
Inferred phylogenies were assessed for their agreement with the commonly accepted family tree of yeast species (see figure 1; we found excellent agreement among the inferred trees assessed using the clann software package [ 38]) and the widely accepted phylogenies for the yeast and nematode species, which are shown in figure 1.
Transmembrane domains were detected using the TMHMM software available at http://www.cbs.dtu.dk/services/TMHMM/ and signal sequences were assessed using the SignalP software available online at http://www.cbs.dtu.dk/services/SignalP/.dtu.dk/services/SignalP/
Metabolite-features were quantified after mass spectral deconvolution (ChromaTOF software 1.00, Pegasus driver 1.61, LECO), and their chemical identification was manually assessed using the NIST05 software (http://www.nist.gov/srd/mslist.html) and the mass spectral and retention time index collection of the Golm Metabolome Database [48].
Heritability of expression was assessed using the SOLAR software package73 (http://solar.txbiomedgenetics.org/).org/
