Sentence examples for assess contiguity from inspiring English sources

However it did not incorporate physical mapping data to assess contiguity, collinearity and coverage.

However, so far, it did not incorporate complete cytogenetic mapping data to assess contiguity, collinearity and coverage of the 9930 draft genome.

A custom Perl script was developed to assess the contiguity of the predicted transcripts.

We used the CEGMA pipeline (Parra et al. 2007) to assess the contiguity of both the V1.0 and V1.01 assemblies with respect to a set of highly conserved eukaryotic genes.

Individual BAC assemblies were created with PHRAP [ 74] and assessed for contiguity.

Spatial contiguity was assessed as Queen's contiguity which defines spatial neighbors as those areas with shared borders and vertexes.

Spatial contiguity was assessed as Queen's contiguity that defines spatial neighbors as those areas with shared borders and vertices.

The aggregate CI at index procedure was correlated to remaining gap occurrence in PV pairs to assess impact of lesion contiguity as a secondary parameter.

For this reason, three reference based metrics were used to assess the transcriptome assembly; completeness, contiguity and accuracy [ 10].

It is essential to assess the correctness of de novo assemblies as contiguity may come with a trade off in correctness [ 28]. dnadiff tools from the NUCmer alignment of each set of de novo scaffolds detected 5, 8 and 6 translocations, 3, 4 and 7 relocations for Velvet, ABySS and CLCbio respectively.

We used this weights matrix to assess spatial autocorrelation and dependence as it is contiguity-based and thus provides a logical approach for considering the effects that area-based characteristics such as poor housing conditions or land cover might have on their surrounding locations.