Sentence examples for assess by sequence from inspiring English sources

Although some RETA CDS have a clear rickettsial signature (i.e., rvhD4, parA, and ampD described previously (Felsheim et al. 2009; Baldridge et al. 2010; Gillespie et al. 2010; Nikoh et al. 2010), many of the mined CDS had limited %ID to any counterparts in the NR database, making distinction even between eukaryotic and prokaryotic proteins often difficult to assess by sequence comparison alone.

The effect of gene duplication on evolutionary rate was also assessed by sequence comparison between orthologs that have paralogs (duplicates) and those that do not (singletons).

These two phylogenetic delimited groups showed different domain structure as assessed by sequence LOGO composition, suggesting that each one of them function with distinct substrates [ 20].

These features indicate that Lep-Caspase-4 is a peculiar caspase, the function of which cannot be solely assessed by sequence comparisons.

HFE genotype (C282Y and H63D variants) and the TMPRSS6 rs855791 C > T polymorphism, (p.A736V variant) were assessed by sequence allele specific PCR as previously described [ 25, 28].

As assessed by sequence information, the cells used in the cell counting and colonies formation assays, have been transfected with a plasmid carrying a wild-type sequence of Mxi1 derived from a different PCR.

The Type I RM systems encoded by the bacterial species used as the sources of the ArdA proteins examined here, namely, E. faecalis, B. fragilis and S. aureus, do not belong to the same family when assessed by sequence conservation (data not shown, sequences of Type I RM systems obtained from REBASE [25]).

Library quality and diversity was further assessed by sequencing 20 colonies of each library.

HR-DNA repair gene mutations were assessed by sequencing of PDX samples using the NGS-based BROCA assay: PDX #11, #13, #27, #29, #56, #62 were analyzed using BROCA v4 assay and were previously published34; and all others were analyzed by BROCA v6 (Supplementary Data 6).

The levels of editing assessed by sequencing were quantified by the DS Gene program (Accelrys).

Microbial diversity was assessed by sequencing up to 24 clones per subject.