The phrase "assembly separately" is correct and usable in written English.
It can be used when referring to the process of putting together components or parts in isolation from one another.
Example: "Please ensure that you complete the assembly separately for each component to avoid confusion."
Alternatives: "assemble individually" or "put together separately".
Our sequencing and assembly strategy includes two points: do not pool reads from different samples but carry out assembly separately; guarantee the amount of sequence data for each assembly.
We extracted 20-bp end tags from both forward and reverse sequencing reads and aligned them to the reference genome assembly separately using BWA [ 29].
These two analyses identified 97.6% and 94.2% of the two EST assemblies in our S. suchowensis genome assembly, separately, with > 95% identity and > 50% coverage of query length, confirming the nearly complete coverage of genic regions (Supplementary information, Table S1F).
Second, it is much faster than BLAST, so that we could perform ortholog assembly separately for each set of genomes, thereby finding proteins conserved within the taxa under study, but not conserved more generally.
Approximately 90% of full-length cDNAs were matched by the six assemblies separately, and nearly all matched assembled transcripts covering over 90% of the full-length cDNA in length.
To obtain a reasonable comparison, RepeatModeler was run using both the M_zebra_v0 and M_zebra_UMD1 assemblies separately.
Reads from four samples were mapped to the six assemblies separately.
To test whether uneven distribution of GC base caused the variation of coverage depth on each NGS reads, we measured the GC contents in high or low coverage regions, and in gap regions in 454, GAIIx, and SOLiD assemblies separately.
To compare transcriptomes of Aa and Am, we mapped single-end filtered reads from both species to both transcriptome assemblies separately using Bowtie-0.12.3 Bowtie-0.12.3wing three mismatches and ignoring quality score.
To date it is still under debate whether the base complex assembles separately, whether the assembly is templated by the 20S core particle, or whether alternative assembly pathways exist.
In order to take platform dependent sequencing artifacts into consideration, 454 and Illumina reads were assembled separately using different assembly programs.
