Sentence examples for assembly program from inspiring English sources

The preprocessed sequences were then assembled using assembly program with default or optimal parameter.

MetaVelvet is an extension of a single-genome assembly program (assembler), named Velvet.

Sequence reads were assembled with the CAP contig assembly program [ 33] and proofread with the BioEdit software [ 34].

The filtered library file was assembled using the contig assembly program CAP3 [ 24].

The trimmed and size-selected reads were assembled using the Newbler assembly program (Roche).

The clustering was performed using megablast [ 81] and the resulting clusters were then assembled using the CAP3 assembly program [ 82].

The paired-end reads associated with each RAD site were extracted and the 30 1000 sequences sent to the de novo assembly program Velvet [9].

Contig Assembly Program 3 (CAP3) was used to cluster the overlapping ESTs into contigs [ 19].

The second step constructed coherent contigs from the previous clusters using the CAP3 assembly program [ 42].

Contigs generated by MIRA are further passed to the Contig Assembly Program (CAP3) [ 36], to extend the MIRA assembly.

We compared the output of Trinity to another de novo assembly program, Velvet-Oases [ 56] (Additional file 1).