The phrase "assembly pipelines" is correct and usable in written English.
It can be used in contexts related to manufacturing, production processes, or software development where tasks are organized in a sequential manner.
Example: "The factory implemented assembly pipelines to streamline the production of their new product line."
Alternatives: "production lines" or "manufacturing workflows".
Indeed, it seems likely that automated genome assembly pipelines would have difficulty assembling a sequence with 5.3 kb perfect (or nearly perfect) IRs.
In the process of assembling CHIR_1.0, a first draft was produced by standard in silico assembly pipelines yielding numerous scaffolds, followed by an automated optical mapping procedure to assemble scaffolds into super-scaffolds and finally conservation of synteny with cattle was assumed in unassembled regions to organize super-scaffolds into whole chromosomes.
Based on preliminary data using different computational assembly pipelines, including the 454 GS Assembler software, we chose to assemble the 454 sequence data using SeqMan Pro 8.1.1 (DNASTAR Lasergene v8.0 Suite, DNASTAR, USA).
More recently, transcriptome assembly pipelines were developed to post-process the output of de novo genome assemblers: Velvet and ABySS (Martin et al., 2010; Robertson et al., 2010; Surget-Groba and Montoya-Burgos, 2010).
The PacBio sequencing and assembly pipelines generated 13 contigs of 11,005,966 bases (depth of 78.6 and a N50 of 1,367,155 bp) and we conducted sequence comparisons by querying paired contigs in BLATN programs.
Highly polyploid species are particularly challenging for assembly and may necessitate specifically tailored assembly pipelines (Schatz et al. 2012).
Tasmanian Devil Genome Assembly We developed the Phusion2 genome assembly pipeline to assemble large eukaryotic genomes using Illumina short sequence reads.
We developed the Phusion2 genome assembly pipeline to assemble large eukaryotic genomes using Illumina short sequence reads.
ESTs from the SGs of adult female A. variegatum deposited in DBEST as part of a previous publication [ 13] were retrieved and assembled in our assembly pipeline.
The sequences were analyzed and assembled using in-house assembly pipeline, which is integration of phred, cross match and phrap.
These genomes were assembled with the A5 assembly pipeline (Tritt et al. 2012).
