Sentence examples for assembly pipeline from inspiring English sources

Tasmanian Devil Genome Assembly We developed the Phusion2 genome assembly pipeline to assemble large eukaryotic genomes using Illumina short sequence reads.

We developed a de novo assembly pipeline to assemble the Illumina short reads (Supplementary Fig. 2), which integrated the existing assemblers Phusion2 (ref. 40), SOAPdenovo, Abyss41 and SSPACE42.

We developed the Phusion2 genome assembly pipeline to assemble large eukaryotic genomes using Illumina short sequence reads.

ESTs from the SGs of adult female A. variegatum deposited in DBEST as part of a previous publication [ 13] were retrieved and assembled in our assembly pipeline.

The sequences were analyzed and assembled using in-house assembly pipeline, which is integration of phred, cross match and phrap.

These genomes were assembled with the A5 assembly pipeline (Tritt et al. 2012).

Fourth, our assembly pipeline succeeded in simultaneously assembling an additional B. subtilis specific plasmid sequence.

These ESTs were then assembled with the Distiller EST assembly pipeline [ 17], which uses a backbone Microsoft SQL server.

We tested three different assembly methods: CLC Genomic Workbench de novo assembler, the Broad Institute's Trinity assembly pipeline (Grabherr et al. 2011), and Roche's gsAssembler (Newbler v2.8).

These data were assembled using Amplicon Express' proprietary in-house assembly pipeline.

More than 600 million single end reads were assembled using a two-step de novo assembly pipeline, Figure  1A.