The phrase "assembly package" is correct and usable in written English.
It can be used in contexts related to software development, manufacturing, or logistics, referring to a collection of components or code that are packaged together for distribution or deployment.
Example: "The assembly package includes all the necessary parts to build the device, along with detailed instructions."
Alternatives: "assembly kit" or "package assembly".
Contigs were assembled using the Velvet assembly package (Zerbino and Birney 2008).
The sixteen wheat BACs were assembled using the Phred/Phrap sequence assembly package [ 23].
Sanger trace files were assembled using the Staden sequence assembly package [ 71], and compared to the Illumina derived sequence using the MEGA5 alignment tools [ 72].
Overlapping fragments were assembled into haplotype blocks using the RefHap haplotype assembly package [ 22] (Additional file 1: Note S2).
For assembly of short read Illumina sequences, the Velvet assembler was used in conjunction with the AMOS assembly package [ 10, 11].
Reads clustering is the core part in this assembly package.
MiSeq reads were assembled with the Velvet (v. 1.2.08) assembly software package [ 29] using default parameters, but with varying kmer lengths.
In order to close remaining gaps between contiguous sequences (contigs) still present after the automated assembly, the visual assembly software package Consed [ 40, 99] was utilized.
Vector and primer sequence were screened out by Cross_match software included in Phrap assembly software package (http://www.phrap.org/phredphrapconsed.html, last accessed January 20 , 2014.
We generated 20,927 contigs for American chestnut healthy stem and 50,612 contigs for Chinese chestnut healthy stem using the Newbler assembly software package (454 Life Sciences) with an average length of 273 nt and 330 nt, respectively.
The first widely available haplotype assembly software package was presented in Panconesi and Sozio (2004) in which the authors describe the Fast Hare algorithm, which optimizes the 'Min Element Removal' problem.
