Sentence examples for assembly of maps from inspiring English sources

Recent advances in deep sequencing technologies have enabled for example, global analyses of transcription profiling and assembly of maps of transcription factor occupancy and higher order chromatin organization, at nucleotide level resolution.

Because the rice genome is significantly larger than previous genomes we have optically mapped, and assembly of optical maps is computationally demanding, we designed our assembly scheme (Fig. 1) to effectively leverage cluster computing resources for handling very large single molecule data sets.

We believe that similar ideas can be applied for map-to-map alignment and de novo assembly of experimental maps.

Based on the scaffolds of JIII-386, possible connections between contigs within the assemblies of MAP S397 and CLIJ361 could be determined (see supplementary table S8) which might be helpful for further improvement of these assemblies.

De novo assembly of genome maps was performed using a graph-based assembler.

The analytical framework for assembly of optical maps is analogous to sequence assembly.

Clearly, the assembly of physical maps can be significantly improved by identifying the specific Q-clones in each contig, which in turn will enable evaluation of their location within the contig and relationship to the neighboring clones.

Although our previous publications report a high degree of accuracy and minimal biases stemming from the iterative assembly pipeline [ 22, 23, 26], we compared the iterative assembly of optical maps constructed from UMD3.1 vs. Btau4.6 using chromosomes 27 and 28 (Fig.  10).

The use of chromosomal DNA could greatly simplify the assembly of optical maps in organisms with large and polyploid genomes such as bread wheat, and preliminary results confirmed that DNA from flow-sorted chromosomes is suitable for optical mapping (unpublished observation).

The initial step is the de novo assembly of optically mapped molecules to construct a 'consensus' optical map from single DNA molecules at high redundancy.

Evidence for exon-exon junctions corresponding to 39/48 insertions was uncovered through local sequence assembly of reads mapping to the region of the putative insertion.