assembly length

USAGE SUMMARY

The phrase "assembly length" is correct and usable in written English.
It can be used in contexts related to manufacturing, engineering, or construction, where the length of an assembled item is relevant. Example: "The assembly length of the final product must not exceed the specified dimensions to ensure proper fit."

✓ Grammatically correct

Science

Human-verified examples from authoritative sources

Exact Expressions

45 human-written examples

Benchmark using the Assemblathon1 and GAGE datasets showed that SOAPdenovo2 greatly surpasses its predecessor SOAPdenovo and is competitive to other assemblers on both assembly length and accuracy.

GigaScience

Nuclease treatment had no impact on phage genome assembly length, which in most cases was within 2 bases of the reference assembly.

Plosone

The average assembly depth estimated by calculated assembly length divided by actual assembly length was 14x (indicated by the yellow dashed line), around which large contigs were clustered.

BMC Genomics

Half of the total assembly length is in the largest 1,054 contigs.

BMC Genomics

The longest 3,000 scaffolds represented over 85% of the assembly length (Supplementary Fig. S1).

DNA Research

The single assembly length ranged from 201 bp to 13,067 bp.

BioMed Research International

Human-verified similar examples from authoritative sources

Similar Expressions

15 human-written examples

The longer assembly lengths created by long-insert RAD-PE contigs match the several kilobase output projected for the next generation of high-throughput sequencers, and the local assembly step also simplifies the computational needs of a de novo assembly project.

Plosone

The combined assembly lengths were 38.6 Mb and 43.4 Mb for Tcm and Tcc X10 respectively.

BMC Genomics

DOI: http://dx.doi.org/10.7554/eLife.04775.006 There was a trade-off in the assemblies between N50 and overall assembly lengths, as a function of kmer size.

eLife

Results for the high diversity dataset were similar, though haplotype assembly lengths suffered in comparison, particularly at high error rates where true SNPs are difficult to distinguish from rare alleles (Supplementary Figures 2(a) and 2(b), Additional File 1).

BMC Genomics

Simulation results revealed that depending on the delays' magnitude the average mean shift of the resulting assemblies' length increased between 5% and 64% whereas the average standard deviation increased between 3% and 33%.

Procedia Engineering

Expert writing Tips

Best practice

When describing genome assemblies, clarify whether you are referring to the total assembly length or the N50 statistic, as these provide different insights into assembly quality.

Common error

Avoid using "assembly length" interchangeably with genome size. "Assembly length" refers to the total length of assembled contigs, while genome size is the estimated or known size of the organism's genome. The assembly length can exceed genome size due to duplications or errors.

Linguistic Context

The primary grammatical function of "assembly length" is as a noun phrase acting as a subject or object in a sentence. Ludwig AI confirms its usability in diverse scientific contexts.

Expression frequency: Common

Frequent in

Science

100%

Less common in

News & Media

0%

Formal & Business

0%

Academia

0%

Ludwig's WRAP-UP

The phrase "assembly length" is a grammatically sound noun phrase predominantly used within scientific discourse to specify the total length of an assembled sequence. Ludwig AI validates its correct usage. Its communicative purpose lies in quantifying genomic or transcriptomic reconstructions. The register is formal and scientific, aligning with its use in academic papers. Alternatives include "total assembled length" and "overall assembly size", offering nuances of meaning. When writing, be mindful to differentiate between "assembly length" and genome size. Overall, "assembly length" serves as a precise descriptor in the realm of sequence assembly.

More alternative expressions

Phrases that express similar concepts, ordered by semantic similarity:

total length of assembly

Rephrases the term to emphasize the completeness of the length measurement.

total assembled length

Specifies that the length refers to the entirety of the assembled object.

overall assembly size

Focuses on the size, which implies length but can also encompass other dimensions.

assembled sequence length

Specifically relates to the length of a sequence after assembly.

resulting assembly length

Emphasizes that the length is a result of an assembly process.

length of assembled construct

More formally specifies that the length pertains to a constructed item.

final assembled size

Highlights the final size post-assembly, with size being a more general term.

post-assembly length

Highlights the measurement happening after assembly is completed.

aggregate assembly length

Indicates the combined length from multiple assembled parts.

composite assembly length

Suggests a length made up of different components assembled together.

FAQs

How is "assembly length" measured in genomics?

In genomics, "assembly length" refers to the total number of base pairs in the assembled contigs or scaffolds, representing the reconstructed genome sequence.

What does a longer "assembly length" indicate?

A longer "assembly length" generally suggests a more complete and contiguous reconstruction of the target genome, but it doesn't always guarantee higher accuracy.

How does "assembly length" differ from N50?

"Assembly length" represents the sum of all assembled contig lengths, while N50 is a metric indicating contiguity. N50 is the length of the shortest contig at 50% of the total assembly. A higher N50 indicates a better assembly with longer contigs.

What factors affect the final "assembly length"?

Several factors influence "assembly length", including the sequencing technology used, the depth of coverage, the complexity of the genome, and the assembly algorithm's parameters.