Sentence examples for assembly depth from inspiring English sources

However, the usefulness of EST resources for detecting in silico SNPs varies depending on the assembly depth, the range of tissues considered, the diversity of the target species, but also on how well this diversity is represented within the database [2], [16], [17].

Because our average assembly depth is only about four times, most polymorphic nucleotides in our contigs will not pass our criteria for SNP discovery.

The average assembly depth estimated by calculated assembly length divided by actual assembly length was 14x (indicated by the yellow dashed line), around which large contigs were clustered.

Additionally, the assembly depth of the contigs, calculated contig length (number of clones multiplied by the average insert size of 143 kb) divided by the actual length of the contig, were plotted against the length of contigs (Fig.  1b).

Aggregated reports are also generated, but this step may have to be repeated by the user (for example when running the pipeline in parallel on separate machines, or when re-weighting the fragments according to additional, external information such as assembly depth or sample size).

The largest SAR11 rRNA-anchored scaffold reconstructed with the Celera Assembler was relatively small (ca. 21,000 bp), and assembly depth-of-coverage was low (0.94 – 2.2 fold) [ 7].

(2) The stiffness of the guiding catheter-guidewire assembly, the depth of dilator insertion and gentle movement with dilators having an oily smoothness prevents PTM damage.

There are four factors that would influence the detection of SDs in genome assembly: (1) depth of genome sequencing, (2) methodology of assembly, (3) quality of genome annotation and (4) level of allelic variation.

Therefore, the results presented here represent a subset of the total gene duplicates that may differ from the subset of gene duplicates identified by other techniques such as sequence assembly or depth of coverage.

Despite the challenges in de novo assembly the depth of sequencing provided by NGS is so high that is quite suitable for detection of mitochondrial genome variants in a cell [ 17].

We used Tablet 1.10.01.28 to inspect the remaining genome assemblies for depth of coverage and potential misassemblies [ 77].