Exact(1)
This allows, for example, the location of the gene to be compared over time, between Ensembl releases, assembly builds, patches and changes to the gene model and permits many other 'through-time' analyses of genome assemblies to be contemplated.
Similar(59)
To link the Wales plant to the transport network, the Welsh assembly built the mile-long "Ffordd Amazon road" at an additional cost of £3m.
It's a toy that requires (or rather, inspires) assembly, built using an included hex tool from a dozen parts, including a chassis, seat pan, seat, fenders, wheels and articulated front and rear suspension components.
Using HapMap and the Human Genome assembly build 36.2, SNPs in or within 1000 base pairs (bp) upstream of the known genes located in the 3q24-25 region (P2Y12 locus) were identified.
To calculate genetic position for markers not on the Decode map, linear interpolation was used between the two closest common markers flanking the markers to position, using physical distances provided by human genome assembly, build 36.
This HapMap build was based on the NCBI human genome assembly build 35 [ 26].
We used genome assembly build 4 of Oryza sativa L. ssp.
Existing genomic mapping information was incorporated unless the underlying genome assembly build differed.
The end result of running our pipeline is an assembly built from multiple long contigs.
Mouse sequences were obtained from NCBI ftp site in FASTA format: two WGS assemblies for projects AAHY and CAAA [ 73]; the reference genome assembly build 37.1 and Celera genome assembly build 37.1 [ 74]; MGSC genome assembly release 3 [ 75].
Intron-exon boundaries were determined by aligning porcine cDNA sequences against either the partial pig genome sequence assembly (build SScrofa5) or against the bovine whole genome sequence assembly (build Btau 4.0), assuming conserved gene structures between both species.
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Justyna Jupowicz-Kozak
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