The phrase "assembly accession" is not commonly used in written English and may not be immediately clear in meaning.
It could be used in contexts related to the gathering or collection of items, particularly in technical or organizational settings, but clarity may be lacking without additional context.
Example: "The assembly accession of new components will take place next week to enhance our production capabilities."
Alternatives: "collection assembly" or "gathering accession".
Reads were mapped to both a Velvet assembly (accession numbers JO692619 to JO767447) [ 16] and to a Trinity assembly (accession numbers GABP01000001 to GABP01114492) [ 17] using BWA (Burrows-Wheeler transformation) [ 47].
The assembly name, assembly accession, contig N50, and scaffold N50 are reported from the NCBI Assembly resource.
Genomic DNA sequence assembly accession numbers for all genomes (Table 2) and publicly available FASTA files for the 14 reference genomes used were obtained from the NCBI.
We selected large scaffolds that were identified as syntenic to the D. melanogaster Muller elements (Schaeffer et al. 2008) (see supplementary table S3, Supplementary Material online, for full list of scaffolds; GenBank assembly accession number: GCA_000005115.1).
RefSeq accessions were compiled from each cluster and their corresponding Genoscope (8x assembly) accession, if available, were input into the AgriGO agricultural gene ontology (GO) analysis tool (http://bioinfo.cau.edu.cn/agriGO/analysis.php) to elucidate enriched GO terms within the cluster when compared with GO terms in the complete V. vinifera transcriptome [ 34].
The samples from which these mRNA sequences are derived are described above in the section on RNA sequencing and transcript assembly (accessions GenBank:SRX092158, GenBank:SRX092159 and GenBank:SRX101672).
The MRE11A reference genomic sequence (NCBI Accession NG_007261.1 HG19 assembly accessed January 2011, size 76.6 kb) was used.
SoapDeNovo2 pvi1.1.Jan2013 genome assembly (ENA accession number ERZ094017) Trinity de novo transcriptome assembly (ENA accession number ERZ097159) Peptide and coding sequences for the pvi1.1.Jan2013 assembly Gene annotations and repeat annotations for the scaffolds Sequence Read Archive accession numbers for all sequencing runs.
The sequencing reads have been deposited to NCBI's SRA database with the assembly output (Accession number: SRA009034) and contig sequences have been submitted to the Transcriptome Shotgun Assembly sequence database (TSA) of NCBI (accession number: EZ915182 - EZ933284).
A single contig of 38,498 bp was obtained for GS_18J19 after the initial assembly (GenBank accession EU450800).
