The phrase "assembly a set of" is not correct in English.
Did you mean "assemble a set of"? You can use the corrected phrase when referring to the action of gathering or putting together a collection of items or components.
Example: "We need to assemble a set of tools before starting the project."
Alternatives: "compile a set of" or "gather a set of".
We call mechanical assembly, a set of undeformable components connected together by mechanical joints.
an assembly (a set of contigs); a set of related genomes; and a phylogenetic tree of all the genomes (including the target assembly).
The Ragout software is freely available at: https://github.com/fenderglass/Ragout. Ragout takes as input: an assembly (a set of contigs); a set of related genomes; and a phylogenetic tree of all the genomes (including the target assembly).
In the optimization step, we start with an initial assembly (a set of walks in the assembly graph), and iteratively propose changes in order to optimize the assembly likelihood.
From the 59 178 transcript isoforms obtained by Oases assembly, a set of 53 409 non-redundant transcripts (including only the largest transcript isoform) was obtained with N50 length of 900 bp, largest contig length of 8173 bp and average contig length of 523 bp (Fig. 2A).
Due to the incomplete nature of our trypanosomatid assemblies, a set of criteria were used to avoid including contaminant sequences in our analyses.
To compare the assemblies, a set of benchmark contigs were created that contained 30,853 mate-pairs (61,706 ESTs) which aligned to 5437 of the KOME rice FL-cDNAs [ 35] (see Additional file 3: Benchmark contigs).
To evaluate the completeness of the assembly, we compared the Rnnotator assembly with a set of previously annotated genes for each organism.
The compression assembly shares a set of new mechanism with the deployment assembly and locking assembly.
We have also adapted our tool to improve existing assemblies after converting a given assembly to a set of walks.
Recall that each assembly is a set of walks in the assembly graph.
