Sentence examples for assembling and alignment from inspiring English sources

Basic sequence analysis, sequence assembling and alignment were done with Geneious software.

ESB designed the study, carried out the molecular genetic studies, performed the sequence assembling and alignment, statistical analysis, and drafted the manuscript.

Traditional phylogenomic techniques require genome assembly, detection of putative orthologous genes from the assembled sequences, and alignment at the DNA sequence level [ 5].

For phylogenetic analyses of each of these 10 species data sets, the sequences from each of them were assembled and aligned using the multiple alignment program CLUSTALW version 1.82 [1.82.

Sequences were assembled and aligned using Bioedit Sequence Alignment editor version 7.0.9.

For phylogenetic analyses, rrs sequences of each of these 15 species were assembled and aligned using the multiple alignment program - ClustalX version 2.0.12 [ 73].

One of the typical annotation pipeline is PASA [ 6]. ② aligning to genome and assembling the alignments, such as TopHat [ 7] and Cufflinks [ 8].

Obtained sequences were assembled into contigs using Clustering and Alignment Tool (CAT) software (Hitachi, Ltd., Tokyo, Japan).

Multiple sequence alignment, clustering, assembling and the generation of consensus were accomplished by StackPACK [ 29].

Nonetheless, our method represents a significant savings in time in post sequence retrieval as the reads were cleaned, assembled, and put into alignment ready FASTA files using BarcodeCruncher.

In the second step of the de novo assembly pipeline these issues were resolved using the Genomic Mapping and Alignment Program for mRNA and EST Sequences (GMAP) [ 14] within Program to Assemble Spliced Alignments (PASA) [ 19].