The phrase "assemblies were extracted" is correct and usable in written English.
It can be used in contexts where components or parts are removed or taken out from a larger system or structure, often in technical or scientific discussions.
Example: "After the testing phase, the assemblies were extracted for further analysis to determine their performance."
Alternatives: "components were removed" or "parts were taken out".
For each species, all annotations with a completeness and contiguity ≥ 95%% in at least one assembly of each assembler (see Additional file 1: Table S1 for differences in assemblies) were extracted, translated to the corresponding amino acid sequences and validated via BLASTp homology searches against the Refseq proteins.
Transcriptomes were assembled and gene expression quantified using the Tuxedo pipeline (version 2.2.1 52, from which predicted splice variant assemblies were extracted, including those that map to the EZH2 locus 6 47530040 47595351 (Supplementary Fig. 3, Supplementary data 6) and other PRC subunits (Supplementary Fig. 4).
Rather than using dense point clouds, the geometric skeleton (wireframe) of assemblies is extracted for further manipulation, once the as-built status is captured using the appropriate method.
Raw count values from read mapping to the de novo assembly were extracted using Trinity perl scripts for each of the four male and four female libraries.
Appropriate representations of the assembly are extracted by direction of access matrix, and then presented to the users participating in collaborative design.
The modes of the system fixture assembly are extracted using a modal test and then a modal substructuring approach is used to apply constraints to eliminate the motion of the fixture.
From these images, the bending modulus of fibrils at different stages of assembly was extracted.
Basic assembly metrics were extracted using the assemblathon_stats.pl script [ 77] and are shown in Additional file 4: Table S2.
Intergenic-expressed regions, according to the current pig genome assembly (Sscrofa10.2), were extracted with Cuffcompare [ 65] and custom Python and R scripts.
These inverse micelle type assemblies in toluene were extracted with an aqueous solution containing a mixture of positively and negatively charged, Rhodamine 6G and Rose Bengal, respectively.
Sequences flanking each gap in the provisional Mt4.0 assembly (2Kb on each side) were extracted and searched against the Mt3.5 assembly (BLAST; ≥ 99% identity, word size = 100).
