Sentence examples for assembler the from inspiring English sources

To determine the amount of usable protein sequence information generated by each assembler, the assemblies were translated as described in methods and compared (Table  3).

We tested three different assembly methods: CLC Genomic Workbench de novo assembler, the Broad Institute's Trinity assembly pipeline (Grabherr et al. 2011), and Roche's gsAssembler (Newbler v2.8).

Though Minia is classified as a low-quality assembler, the quality of assemblies for Minia gets enhanced as the expected genome size increases.

The resulting GS FLX Titanium reads were first assembled using GS de novo assembler; the output contigs in FASTA format were then combined with the supplementary HiSeq 2000 reads in a hybrid assembly using the Geneious Assembler embedded in the Geneious software suite.

Following assembly by the JGI's in-house "pga.lucy" assembler, the unique sequence data is evenly split between assembled contigs (52.6% of sequence) and singletons (47.4% of sequence) (Table 2).

In case of the Velvet/Oasis assembler, the N50 values of transcriptome and genome assemblies could be improved with SEED preprocessing by 12 27%.

The product is released from the assembler at the end of the assembly process, typically as the seventh step.

For this reason, be sure to protect all of your important data (including the kernel, the assembler, and the source code) as described in the data protection section.

Irrespective of the assembler used, the best assemblies were typically produced from the shortest PE library (e.g., table 1).

Both the unexpressed pseudogene and its corresponding expressed gene may be reported by the assembler if the implementation of the assembler does not consider such cases.

Parentheses contain the rank the assembler on the specific dataset.