The phrase "assembler on" is not correct and lacks clarity in written English.
It may be intended to refer to a specific context, such as a software or hardware environment, but it is incomplete without additional information.
Example: "The assembler on the system needs to be updated for compatibility."
Alternatives: "compiler on" or "program on".
This traversal allows us to localize the assembly; we then use the Map Assembler on the subsets of Rmaps that are near each other on this graph.
In the case with the Milkweed transcriptome the differences between Newbler 2.3 and later versions were not as drastic as reported by Kumar and Blaxter [ 46] suggesting that the impact of the assembler on the length of the assembly varies.
Final genome assembly was generated by the Newbler assembler on all Roche/454 reads, selected Illumina reads (paired and unpaired reads for the 200 bp library, paired reads for the 500 bp library), and SOLiD reads (in Additional file 1: Table S1).
By comparing the results of a perfect assembly process to those of a widely used assembler on a number of simulated datasets, we comprehensively evaluated a host of quality metrics for de novo transcriptome assemblies.
Applying all possible combinations of the two parameters for each assembler on both species' read sets resulted in 18 assemblies per species.
He'd been the fastest window assembler on the line and took great pride in his work.
(For an assembled PC, you may have warranties on the individual components as well as what the assembler provides on the assembled PC itself).
Benchmark using the Assemblathon1 and GAGE datasets showed that SOAPdenovo2 greatly surpasses its predecessor SOAPdenovo and is competitive to other assemblers on both assembly length and accuracy.
We also tried other assemblers on the same dataset, but only SOAPdenovo finish the assembly.
Recently, a similar simulated sequencing and perfect assembly methodology was used by Mundry et al. to evaluate four assemblers on a single dataset [ 18].
They deliver parts to the assemblers on an as-needed basis and are normally paid 60 days after delivery.
