Exact(1)
Two recent software releases, from PacBio and the Celera Assembler group, allows for the error correction of PacBio reads without the need for short reads from another technology [ 16, 17].
Similar(59)
Apart from mainstream de novo assemblers, several groups have worked on incorporating available related assembled genomes into the assembly process (Pop and Salzberg, 2008).
But for the company, the project manager might actually be supporting an entire division, or might be nothing more than a person who is supporting a small group of assemblers.
Sequence data were assembled using NewBler assembler and Consed.
Resulting demultiplexed data sets were assembled using Celera Assembler v6.1 (http://sourceforge.net/projects/wgs-assembler/).
Error corrected long reads were then assembled using Celera assembler.
Sequences were assembled using Celera Assembler (Levy et al. 2007).
In addition, recent versions of the Newbler assembler from 454 allow for assembling sequences from cDNA, grouping presumptive gene isoforms together.
How can a group of obscure motorcycle assemblers in China challenge the best Japan has to offer?
Second, the preprocessed data for each individual pool were assembled by the Newbler assembler from 454/Roche.
The fosmid sequences were assembled using the 454 assembler program.
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