The phrase "assembler as" is not complete on its own and lacks context, making it difficult to determine its correctness in written English.
It can be used in contexts where you are describing the role or function of an assembler in relation to something else, but it needs additional information to be clear.
Example: "The assembler as a key component in the manufacturing process ensures efficiency and accuracy."
Alternatives: "assembler in the role of" or "assembler functioning as".
The most common use of khmer is for preprocessing short read Illumina data sets prior to de novo sequence assembly, with the goals of decreasing compute requirements for the assembler as well as potentially improving the assembly results.
The ABySS assembler performed consistently for all four strains, as it generated similar statistics to the SPAdes assembler as well as generating the best assembly for strain CF080 using PE data.
It includes both the GCC compiler (a highly optimizing C compiler that is the standard compiler on Linux, and also is the core of DJGPP, which was used to build the DOS versions of Doom and Quake) and GNU assembler, as well as the A68K assembler (which was historically the assembler of choice for most calcuatlor assembly programmers).
The effects of alternative splicing on the ortholog hit ratio depend on the abilities of the assembler, as well as on whether the reference B. mori protein set contains orthologs to alternatively spliced transcripts.
This information was fed back into the assembler as fake paired ends and another series of incremental assembly was performed leading to 5 contigs with 1,715,028 bases and N50 of 1,033,009.
De novo assembly of RNA-Seq data was carried out using the Trinity assembler, as previously described [ 62].
The quality of this assembly is difficult to assess without other independent sources such as libraries of different insert sizes, and we therefore did not compare the results of various assemblers (as, e.g. Shahin et al. 2012 did) or merged assemblies (Vicedomini et al. 2013).
Also, various Cross-Assemblers as well as the Assembler format are discussed in this chapter.
A next generation of genome annotation tools used EST, protein and RNA-seq aligners, and assemblers as well as combiners in addition to predictors, to improve the accuracy of their predictions (see [ 84], for a review on annotation tools).
During contig assembly assemblers such as ABySS, Trans-ABySS and Trinity, k-mer size specifies the length of an oligonucleotide sequence used for building the de Bruijn graph (see [ 10] for a short introduction).
AV 454 is selected as a representative for overlap-layout-consensus based assemblers, as it was designed specifically for viral population consensus assembly.
