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Resulting sequences were assembled using the assembler in Geneious v5.1.7.
The sequence reads were assembled using the CAP3 algorithm[ 33].
454 pyrosequencing reads were assembled using the Newbler assembler version 1.1.02.15 (Roche).
Reads were aligned and assembled using the Newbler assembler software provided with the GS FLX instrument.
The fosmid sequences were assembled using the 454 assembler program.
Contigs were assembled using the meta-assembler workflow in CAMERA [ 80].
Sequences were assembled using the Newbler assembler version 2.3, provided by Roche.
The 454 sequence was assembled using the 454 Newbler assembler version 2.3.
These genomes were assembled using the IDBA-UD assembler.
Quality filtered sequences from whole-genome shotgun-sequencing were assembled using the 454 Newbler assembler.
The obtained nucleotide sequence reads were assembled using the Newbler de novo sequence assembly software.
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