Sentence examples for assembled to align from inspiring English sources

The pattern of molecules was subsequently assembled to align with the Illumina-based assembly to achieve sequence extension.

From each member of each contig, the corresponding 5′ sequences were assembled to align the sequences on 5′-end.

The parallel fibers were formed along the molecular backbones due to the molecular backbones were sheared to rearrange in alignment along the direction of the contact line receding and had enough time to assemble to aligned fibers and improve the crystallinity when the contact line receded slow (1 μm/s).

The assembled contigs from all of the clusters were used in place of the reference in the second iteration, and the Rmaps were again aligned and assembled to produce a new set of Rmap contigs.

After removing adapter sequences, the high quality sequence reads were aligned and assembled to the A. thaliana reference genome (TAIR10) using TopHat 2.0.6 (http://ccb.jhu.edu/software/tophat/index.shtml) with Bowtie 2 (http://bowtie-bio.sourceforge.net/index.shtml) with the default parameters, allowing only 2 base mismatches per read alignment [ 61].

Even in the absence of an assembled genome to align to, it may be possible to align contigs with each other and infer elements of gene structure such as exon-intron boundaries (see Figure 2).

Because of this ambiguity, and the necessary tolerances to ensure correctly assembled contigs align to the locus in the optical map, misassembled contigs may also align to loci in the optical map, which by coincidence have a fragment sequence similar to the contig within the threshold margin of error.

For all of the data sets, over 95.0% of the assembled contigs align to the genome at over 95% of the contig length.

957 (40.1%) of the selected PASA assembled models align to an entry in NRdb (Table 1) and 482 (20.2%) of the remaining predictions have some overlap (see Methods) to models in the Frozen Gene Catalog [ 1], which we will refer to as FGC07 (see Methods).

Regardless of the MPS chemistry or platform employed, sequence data in homopolymer regions are likely to continue to be challenging to assemble and align when LHP is present.

In order to minimize false SV calls supported by the assembly, the assembled contigs were aligned to the reference human genome using an additional alignment algorithm SSAHA2 [ 34], and the SVs again validated using R-SAP.