Sentence examples for assembled sequence length from inspiring English sources

The X. maculatus Jp 163 A genome assembly comprises 20,640 scaffolds with an N50 of 1.3 Mb and the final assembled sequence length is 730 Mb [ 2].

In their study, 38,159 transcripts were annotated with an average assembled sequence length of 678.65 bp as compared to our results of 44,448 annotated transcripts with an average length coding length of 1,228.27 bp.

The N50 statistic thus describes a kind of median of assembled sequence lengths, giving greater weight to long sequences.

The total assembled sequence lengths of the 36 isoforms ranged from 503 to 2,460 bp and only 14 contained complete open reading frame (ORF).

The contiguity statistics NX (describing X% reconstruction in assembled sequence lengths NX or longer) are typically locally concave-down functions of the k-mer length in a neighborhood where the total sequence reconstruction is close to the genome length.

The next class of transcriptome assembly metrics concerns the intrinsic properties of the assembled sequences including length, coverage (number of bases incorporated in contigs from reads divided by length) and N50 length, defined as the shortest sequence length such that half of the total sequence output length is included in sequences that are shorter.

As for the assembled sequences with length no less than 300 nt, the potential ORFs were predicted locally by OrfPredictor [ 80] using default settings, and the amino acid sequences whose lengths were not less than 100 were screened for genes with potential alien origins using AlienG [ 41].

The length of all-unigenes was dramatically increased following further assembly of the C21 and T43 unigenes, resulting in assembled sequences with lengths of > 300 bp.

The dnOST yielded over 55 Mb of assembled sequence, with an average transcript length of 1,043 nt and average sequencing depth of 74.8×.

The total length of assembled sequence, numbers of targeted exons and genes assembled, amount of flanking sequence assembled from the splash zone, percentage of plastome and nrDNA cistron sequence assembled from the off-target reads based on the lengths of the reference sequences, and percent divergence from the A. syriaca exon sequences were calculated for each species.

Chromosome lengths and position of LD regions are relative to the length of the assembled sequence for that linkage group; most identified LD regions are <50 kb.