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Al, Cr and Cr/Al 50/50 target segments were assembled pairwise to synthesize Cr1−xAlxN hard coatings in the range of 0.21 ≤ x ≤ 0.74 at a high compositional resolution within two deposition runs.
Liu et al. (2008) proposed a two-step approach wherein an encompassing directed network (EDN) is first generated from assembled pairwise regulator target relationships (which might be direct or indirect), followed by the application of structural equation models to search for a (possibly) cyclic network nested in the EDN, which best fits the data according to the BIC criteria.
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We assembled 94906 pairwise eukaryotic protein-protein interactions from BIND, DIP [ 29], HPRD, MINT [ 30], Mpact [ 31] and MPPI [ 32]. 29074 of those interactions were between different proteins from human, mouse or rat and were used in this study.
The resulting gene network is assembled from scored pairwise relationships.
To determine the consistency of our results with other accepted methods, we compared our MST with a published Acinetobacter UPGMA cladogram (McQueary et al. 2012) that had been assembled from a pairwise distance matrix of optical maps.
To evaluate the accuracy of the partially assembled haplotype, we defined a pairwise accuracy measure in previous research [ 22].
Prior to pairwise alignment, contigs assembled from the unmapped DNA reads were sorted by size and only contigs greater than 500 bases were aligned (n = 42,086).
Most of the interactions with which we assembled the MADS network are pairwise, as they were mostly derived from yeast two-hybrid studies.
(6) A 30 × 30 pairwise matrix was assembled by combining the results for all gene trees, and (7) further analysed with the Neighbor-Net [ 51, 52] algorithm in Splitstree4 [ 50, 60] to depict the relationships among the different strains and reveal any conflicting signals in the forest.
The detection scheme employed by HGSDB uses BLAST for pairwise comparisons of all assembled chromosomes.
The resulting list of pairwise alignments is then assembled into clusters of partially overlapping regions.
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