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Two consensus transposons and a putative centromeric tandem repeat were assembled from a pool of 40 and 42-bp WGS reads using nugtohs.pl (unpublished).
Notably, the A. ricciae transcripts were assembled from a pool of samples obtained from bdelloids under normal conditions as well as various stages of desiccation recovery [ 44]; thus, expression of genes with functions in dormancy (Additional file 11) may be attributed to the inclusion of transcripts from the recovering samples.
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The 12-member expert panel was assembled from an initial pool of 23 potential participants, all based in Australia; their details are shown in Figure 3 and the Acknowledgments.
One kind of such references is common RNA pools assembled from a number of different cell lines, tissues and conditions.
A global de novo transcriptome of P. viridis was assembled from the pool of the reads for the six cDNA libraries using Trinity software.
The CLC Genome Workbench (version 4.0.2) [ 75] algorithm for de novo sequence assembly was used to assemble contigs from a pooling of all the short-read data, using default parameters (similarity = 0.8, length fraction = 0.5, insertion/deletion cost = 3, mismatch cost = 3).
However, analyses of null models, where non-interactive local communities are assembled from regional species pools, have demonstrated that much of the structure of local assemblages remains in simulated assemblages where local interactions have been excluded.
These data suggest that WT-mutant heterodimers can transiently incorporate into the cartwheel and perturb assembly but, if given enough time, the heterodimers will dissociate and eventually a cartwheel can assemble from the pool of WT WT homodimers.
It consists of two key components: The 'Declarative Processing Environment', which allows processes to be assembled goal-driven from a pool of process building blocks and the 'Autopoietic Framework' that mimics natural organisms to adapt to environmental changes, new capabilities and new technology.
The increase of bacterial beta diversity across the gradient of flow heterogeneity suggests diversification of hydrodynamic microhabitats along bedforms to generate distinct local communities assembled from the same species pool in the streamwater [53].
Firstly, we tested whether we correctly recover the previous mitochondrial sequences assembling from scratch in a pool of the total reads of the tagged library but after elimination of the species-specific sequence barcodes.
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