Sentence examples for assemble consensus from inspiring English sources

Velvet [ 47] was used to assemble consensus LongRead contigs from the paired end data.

However, we emphasize that this pattern may also reflect our inability to assemble consensus sequences representing all families/subfamilies within each superfamily from low-coverage shotgun data.

To retrieve CHO sequences from this dataset, MAQ was used to assemble consensus genomic sequences of the mouse and rat alignments using sequence overlap information.

The genes assigned on the SGA sequences were denoted by IDs with the assemble consensus names (LjSGA_****) followed by sequential numbers from one end to another in the insert.

While Gentig has successfully been used to assemble consensus optical maps for bacterial genomes, it does not scale well to large genomes, and the software is not freely available.

Following the BLAST searches, we used LANE runner 2.0 to assemble "consensuses" (see Materials and Methods for details).

Detailed assembly metrics for assembled consensus genome maps using strict, default and relaxed "-T" parameter, p-value threshold are named Relaxed-T, Default-T and Strict-T respectively.

More detailed assembly metrics for all five assembled consensus genome maps are available in Additional file 4. Assembled T. castaneum genome maps have been deposited to labarchives (doi: 10.6070/h42f7kf2).

Table  1 represents the assembly information, including the final cleaned reads for the assembly, mRNA count for each species, assembled consensus sequence and average length of assembled consensus.

Reference-based assembly was performed using the CLC Genomics Workbench using default parameters, and assembled consensus sequences were exported into a fasta file.

The assembled consensus contig of each subset resulted in the mtgenome sequence of each gibbon individual.