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Through further application of this method, new mutations in TUB2 and TUB3 were isolated as unlinked noncomplementers of tub1-1.
Model parameters were always taken as unlinked and the rate multipliers set as variable across partitions.
The substitution model, clock model and tree model of the two genes were set as unlinked.
In Leishmania spp. both genes have been characterized as unlinked repeats.
COII and ITS were set as unlinked while assuming the same demographic history.
Substitution rate, rate heterogeneity, and base frequency parameters were treated as unlinked across partitions.
These loci are treated as unlinked as no clear signal of linkage had been found (J. Allen, personal communication).
Time-measured phylogeny using the relaxed clock model [ 48] and tree model were set as unlinked for all partitions.
Pairs of markers located on the same linkage group (LG) were defined as linked markers and those located on different LGs were defined as unlinked markers.
MT score as defined in text.
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