To place each anchor in exactly one LCB, the LCBs are sorted by length in descending order and anchors are removed from the anchor graph as they are aligned into LCBs.
In the given example, a cycle would be formed between nodes C and D as they are aligned in opposite orientation to A and B. This is circumvented by keeping the edge orientation of one graph (G1) for the reverse alignment.
Two insertion deletion polymorphisms (indels) were processed as follows: they were aligned based on translated amino acids, collapsed to single variable sites, and treated as fifth character states in subsequent analyses.
Policy texts often present such discourses together, as if they were aligned.
But, as far as I can see, they're aligned: both, like circling ravenous wolves, make our conversations revolve around food, make us think about it, talk about it, write about it, worry about it, deny it, and, in a Pavlovian way, make us primed to eat more of it.
IUM reads are split into three equal segments working as seeds, and then they are aligned to the reference; candidate seeds alignment results are examined with more sensitive criteria; iterative extension and merging of initial seeds determine the exact spliced alignment for the read.
The player manipulates the capsules as they fall so that they are aligned with viruses of matching colors, which removes them from play.
AS reads were aligned with the Bowtie aligner [23] while SMS reads were aligned with IndexDP [24] (Figure S2).
The matK sequences (with one per species as available) were aligned simultaneously with each other in this manner and saved as an aligned FASTA file.
