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We perform the τ−p inversion using IASP91 as the starting model, as did Alexandrakis and Eaton (2010).
These structures have been solved by molecular replacement using concanavalin (ConA) coordinates as the starting model, and refined against data to 2.0 Å resolution.
The signal subtracted particles were used for further 3D refinement using local search by restricting sigma_ang to 5°, using the map of SUR1 ABC transporter module as the starting model.
The crystal structure of Norwalk virus P protein (PDB entry: 2ZL7) was used as the starting model by the program Phaser (McCoy et al., 2007) to solve the phases of the Boxer P protein structure.
We performed numerical forward modeling to generate a three-dimensional (3D) resistivity structure model that fits the GREATEM data where a composite of 1D resistivity models was used as the starting model.
KH2013 built a V p model of the topmost 700 km of the outer core using differential SmKS travel time anomalies of several Fiji-Tonga events recorded at Europe, d t 3−2, d t 4−3, and d t 5−3, to which a τ−p inversion method had been applied (Garmany et al. 1979; HK2010; KH2013), with PREM as the starting model.
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(40) To prepare an initial model, we removed the NADPH molecules as well as the water molecules from the starting model.
After defining the starting model as above, we assessed, by backward elimination, which confounding factors should remain in the model.
Variables entered into the starting model are as described previously with the addition of atrial fibrillation, ejection fraction and significant valve disease.
Phases were calculated by using molecular replacement from PDB entries 1XSP or 1XSN as the starting models.
The P1 and P21A structures were solved by molecular replacement, using the coordinates of the P21B crystals as a starting model.
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