The processed, i.e. normalized, imputed, and outlier-removed data are provided as supplemental data (Data S1, S2, S3).
The complete amino acid sequences of all identified Ciona proteins are available as supplemental data (Data S2).
The query sequences used for the BLAST searches and for the construction of HMMs are available as supplemental data (Data S1).
Raw data and collated peptide identification information are available to the community as supplemental data at http://omics.pnl.gov/view/publication_1039.html Data analysis and search for PTCMs were performed using a high resolution LC-Orbitrap FT MS/MS dataset.
The database supporting the conclusion of this article is joined to the manuscript as supplemental data (Additional file 3).
The boundary forcing data for the PMIP3 experiments are available as supplemental data of Schmidt et al. (2011, 2012).
Differential expression statistics for all 16117 skin-expressed genes are provided as supplemental data (Additional file 6).
Our master list of kinase domains is available as supplemental data (Table S1).
Oligonucleotide primer sequences have been deposited as Supplemental Data S1 with the journal.
The details of these additional statistical tests are provided as supplemental data.
Accession numbers for the remaining sequences are available as supplemental data (Text S1).
