With the updated known mutants as references, the numbers of known mutants detected and undetected were reported, respectively.
On the other hand, when using the extensive non-redundant vertebrate database as reference, the maximum number of contigs annotated within a single library was 58,404, 3072 contigs more than with the OMA database (Additional file 1: Table S4b).
When detecting DECs using either the Plant DB or PlantClust50 contig sets as reference sequences, the number of DECs exhibiting co-identity with DEGs was decreased.
When DECs were detected using PlantClust50 contig sets as reference sequences, the number of DECs exhibiting co-identity with DEGs was decreased from PlantClustDB.
However, when Mt3.0 cds was used as reference sequences, the number of genes commonly-selected between RNA-Seq and GeneChip data decreased to 337 reflecting a significant decrease in detection sensitivity.
Script used in shell and R to align reads and plot the percent identity and alignment span for each read against its known reference, as well as the number of bases aligned to each reference genome in the larger database.
R and ggplot2 [ 26] were used to plot the percent identity and alignment span for each read against its known reference, as well as the number of bases aligned to each reference genome in the larger database.
With the hexon mRNA copy numbers as reference, the fiber to hexon and penton to hexon ratios were 0.97±0.17 and 0.49±0.14, respectively (N = 6, p<0.00001, paired t test) (Figure 5C).
The final number of matrix multiplications and alignments depends on the Transform-Tanimoto value as well as the number of reference shapes in the vicinity of the query conformer.
Henceforth all references to Gödel's papers will be to those as appear in his Collected Works, Volumes I to V. In particular all page references, as well as the numbering scheme for Gödel's papers, refer to that of the Collected Works.
