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In subunit β2, one non-synonymous SNP (nsSNP) was found at the N terminal signal peptide and involved an alteration of F and S residue at position 12 (aa numbering as in alignment of Additional file 6: Figure S3) and two others, D/E and N/T at positions 400 and 426, were found between transmembrane domain TM3 and TM4.
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This work thus incorporates ClustalW as the built-in alignment tool of PALM owing to its stable performance and popularity.
The structure alignment may differ markedly from the guide alignment, as in the alignment of the eukaryotic translation factor 5A domain and the Hex1/S1-like RNA-binding domain (Fig. 4).
A character originally identified as homologous (in alignment) that contains a homoplasious character state is then defined as not being homologous (e.g. (21)).
We test the robustness of genomic fluidity to changes in the number of sequenced genomes as well as to changes in alignment parameters.
Secretary Clinton's endorsement of the social entrepreneurship movement was framed in the speech as working in alignment with the State Department's strategic goals of fostering innovation.
Vladimir Putin, not incidentally, presented himself in those days as being in alignment with such reformers, whom he later of course squashed.
With this budding awareness, Rob was able to construct a vision of himself as acting in alignment with the deeper aspects of who he truly is, and his "New Year's resolution" turned more into a "New You resolution".
Repeat regions could result in artificial sequence similarity by being used as "seeds" in alignment process [21].
The chromatic aberrations manifest as uncertainty in alignment and co-localization of molecules.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com