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The evaluation throws light into how the effectiveness of incremental maintenance is affected by issues such as database size, and the complexity and selectivity of views.
To reduce the redundant and visualize GO terms in interactive graphs, web-based program REVIGO (Supek et al. 2011) are used with C value of 0.7, whole UniProt as database size and SimRel as semantic similarity measure.
As database size increases, Infernal increases filter stringency resulting in faster search rates without sacrificing appreciable sensitivity at low false-positive rates based on further RMARK benchmarking (results not shown).
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However, as database sizes increase causing result sets to become larger, manual perusal through a list of arbitrarily ordered or alphabetized results to find meaningful information will become tedious, inefficient and slow.
Our results indicate that caution should be exercised when interpreting the presence of genes consistent with EGT, especially as database sizes for particularly well-studied taxa continue to grow disproportionately.
Therefore, the number of generated candidate patterns also decreases as the database size becomes larger.
As expected, for both the segment- and the key-frame-based FSs, the retrieval performance deteriorates considerably as the database size increases from the basic 6-class database to the extended 12-class database.
We also observed an interesting trend: the variation within the same size decreases as the database size increases.
This is why we used only amoebozoans as a control group in Fisher exact tests of the chromalveolate model, to reduce collective biases related to database size as much as possible.
We chose five controls for maximum power within the GPRD's constraints as to total database size.
The use of an API allows data providers to integrate multimedia content without having to worry about the database size as data is only fetched on demand.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com