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Instead of comparing two rat strains knowing that each have 'decreased systemic arterial systolic blood pressure' as annotated with MP, quantitative annotations allow the database user to know how much lower the 'mean arterial blood pressure' is in one strain compared with a different strain or to the same strain under different conditions.
Many of the predicted targets of the up-regulated miRNAs are involved in acute inflammation response, development and cell growth regulation, as annotated with DAVID, a bioinformatics resource that provides functional annotation of genes.
Gene lists from the four cDNA libraries as annotated with Blast2GO were used for IPA pathway analysis.
Input DNA and DNA coimmunprecipitated with α-HA or -γ-H2a.X (IP) antibody were amplified using primer sets along the yeast artificial chromosome (YAC) as annotated with black dashes on the YAC-GALpr or YAC schematic above each graph.
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If during this step additional units or unit definitions need to be added to the submodel, these are simplified as much as possible, annotated with a MIRIAM identifier pointing to the Units Ontology, and equipped with meaningful names and identifiers as appropriate.
It was enriched with genes from the KEGG PD pathway (p = 2.72·10−5, FDR<0.1), as well as with genes annotated with "Parkinson's disease" in Entrez Gene (including GeneRIFs [72], p = 3.58·10−4).
Immune-associated genes were defined as genes annotated with the 'immune system process' Gene Ontology (GO) biological process term (GO 0002376) by the AmiGO annotation tool (505 genes).
PMKs from B. floridae and A. thaliana catalyze the efficient phosphorylation of MVAP as annotated (3) with similar kinetic constants (Table 3).
Isolated CMs were stained and measured as annotated above with the following differences: Fluo 3 AM loading buffer either contained Ranolazine (10 μmol/L), AIP (1 μmol/L), H89 (5 μmol/L), KBR (0.1 μmol/L), or no active agent.
Then, all protein assemblies predicted by DACO across all TF variants were checked for contradictory statements, e.g. whether they harbored proteins that are marked to positively influence transcription as well as proteins that are annotated with repressory function.
Additional file 1 provides the list of probe sets classified as "antisense" or "overlap", annotated with the gene symbol and the gene title.
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