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In Figure 1A, this resulted in the identification of two asRNAs in this region with a gap between them, as annotated in Table 1.
In further tests, certain monoclonal antibodies proved effective in compromising this selection mediated by the immune system (as annotated in Table 1), while others did not.
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Mixtures, coordination complexes and other metal-containing compounds, inorganic compounds, polymers and metalloid-containing (including selenium-containing) compounds (as annotated in the 'cmpd_types' table) were removed.
LINEs, SINEs, LTRs as annotated in the repeatMasker (rmsk) table, as well as CpG islands and segmental duplications were downloaded from the UCSC table browser [ 114].
The up- and down-regulated gene sets were then analyzed for enrichment for specific protein domains as annotated in the pfam database (Table 2).
Interestingly, the genomic sequence of SHL2 that encodes the longest open reading frame is interrupted by a single intron, while OsRDR4 that encodes the second longest open reading frame of 3621 bp has 18 intervening sequences as annotated in TIGR (release 5; Table 1).
Nearly 30%9090) of the CNVRs encompassed 348 full-length genes as annotated in Ensembl [ 52] (Additional file 4, Table S2), but contrary to segmental duplications, the enrichment of CNVRs in genic areas is not significant.
NO-regulated genes annotated disproportionately to the cell cycle [[ 31] of 106 (29%) compared to 407 of 4870 genes (8%) on the microarray, as annotated in the Gene Ontology [GO] Biological Process database; P = 0.0001] (Table 1).
The gene-specific primers (listed in Additional file 2: Table S1) were designed according to the target gene sequences as annotated in Genbank™ (http://www.ncbi.nlm.nih.gov/genbank/).nih.gov/genbank/
Primers sequences are annotated in Supplemental Table 1.
Parameters assessed are annotated in Supplemental Table II b.
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