Sentence examples for as alignment to from inspiring English sources

We used MOSAS [ 33] to identify protein coding, ribosomal RNA, and tRNAscan-SE v1.21 [ 34] as implemented in MOSAS, as well as alignment to other insect mt genomes to identify t-RNA regions.

The pipeline utilises sequence similarity to ncRNA databases (blast), structure similarity to Rfam (RaveNnA) as well as multiple alignments to predict conserved novel putative RNA structures (RNAz).

All predictions as well as tBLASTn alignments to proteomes of reference species and Uniprot, and PSI-tBLASTn alignments to PSSM representative of Génolevures protein families are integrated using JIGSAW [ 74].

We used equal or higher than 98% identity and 70% exon length coverage as alignment criteria to determine the match of an EST with a particular exon sequence.

In those cases, we assign − 1 as alignment position to the contigs.

However, many Galaxy platform tools rely on the presence of reference data, such as alignment indexes, to function efficiently.

To reduce the complexity, we first use the 1-best phone transcription generated by the LVCSR decoder as a reference alignment to divide the whole speech utterance into time slots, and then fill each slot using N-best phone hypotheses.

A typical sequence processing pipeline includes several steps such as sequence cleaning, alignment to known reference sequences, and/or de novo assembly [2], [10].

The local alignment learnt by FOLDALIGN is used as a seed alignment to be improved upon by COVE.

The sixth column shows the number of reporters placed in a single gene, but not the same gene as found by alignment to RNA.

The alignments generated by Prospero were used as an initial alignment to make profile Hidden Markov models using HMMER [ 59], and the resulting alignments were scanned against the Swiss-Prot database.