This statistical test implies the definition of a background as the total set of genes that have been screened for mutations, to avoid bias in the results (Chittenden et al, 2008).
In computing the hypergeometric statistics we used the total number of predicted genes rather than the total number of available upstream regions as the total set size.
Here, we define the pan-genome as the total set of genes within the 20 Bacillus genomes, including plasmid and extra-chromosomal elements (when available).
As the total set of sequences include European sequences, sometimes grouped in European clusters, we wonder whether the population dynamics could be different in the two continents.
By utilizing the total number of genes as the total set size in the hypergeometric computation we are being overly conservative and improved annotation resulting in new upstream regions may improve p-values.
This expected gene count per chromosome assumes that the N-mt genes are distributed across the chromosomes in the same pattern as the total set of genes in the genome.
We further see G as the total set of molecular components of M. With G we break up the boundaries to individual m i, and obtain a mapping of O 3 M := G, which allows describing the community observable as a function of the community genome [ 50].
Number of alleles, observed heterozygosities, inbreeding coefficients (FIS), and genetic differentiation across sampling locations (FST) are shown for each microsatellite marker individually, across the total marker set (total), as well as all markers excluding Lysi07 and recombining Lysi15, 16 and 5a12 (NRL, non recombining loci only).
Abnormal values were set as a total cholesterol level of >5.69 mmol/L (>220 mg/dL), a HDL cholesterol level of <1.03 mmol/L (<40 mg/dL), and/or serum triglyceride level of >1.69 mmol/L (>150 mg/dL).
The correlations of the total set, as well as that of Passiflora remained significant For Decaloba, the lack of significance also remained.
