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According to our classification, the CNR component can be classified mainly as a subnetwork of type A because it is developed in an open science environment.
One example is a global PPI network in heart failure (HF) [ 54], created as a subnetwork of PPIs from HPRD that includes HF relevant genes.
The k-core of a network is defined as a subnetwork of a given network where each vertex has at least k neighbors in the same core.
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This is illustrated by those interactions associated with targeting proteins for destruction, using D-box motifs, as well as by a subnetwork of interconnected SLiM-mediated interactions linked to endocytosis.
As underlying network structure a subnetwork of the TRN of yeast [ 34] is used.
Import of a BioPAX file, selection of a subnetwork of interest saved as a SBML file for the creation of a computational model using an appropriate software package, such as CellDesigner [ 20] or GINsim [ 32].
In contrast, we find that if we calculate ΔD based on evolutionary rate, it is −0.05 while for this network (a subnetwork of the original network as not all proteins in the network are assigned a Dn/Ds ratio), ΔD based on age groups is 0.54 (Additional file 1: Table S8).
Triad represents a subnetwork of three directly connected nodes.
A metabolic pathway is a subnetwork of the metabolic network.
Figure 11 lcm( P t, N ss ) th -order polyphase architecture for FBMC transmitters with rational normalized frequency separation factor Q. Analogously to the previous cases, the final architecture is made up of several polyphase subnetworks of order lcm(Pt,Nss), where the subindex l r can be seen as a subnetwork index for a total of Pto identical polyphase structures of order PtoNss.
We have framed the prediction of functional orthologs in P. falciparum as a subnetwork querying problem.
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