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First, as a quality control criterion, we restricted the searches to gene sets compiled from pathway databases KEGG, BioCarta, GenMAPP, and GO.
While the origin of this erratic linkage disequilibrium pattern is unknown, a precautious strategy would be to exclude markers from these regions as a quality control criterion for GWA studies.
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This observation stresses the importance of using Hardy Weinberg criteria as a quality control measure for genotype data.
In this paper, we also propose minor genotype frequency (MGF) as a filtering criterion and explore its value as a quality control measure.
The triple graph display served as a quality control measure.
The overall homoplasy level (fraction of RGC_CAs which are inconsistent with the species tree) was employed as the quality control criterion.
As a consequence, elaborate quality control criteria for histone PTM antibodies were put forward to ensure the integrity of research (Egelhofer et al., 2011; Kungulovski et al., 2015; Landt et al., 2012).
RCPT, conforming to ASTM C 1202 is one of the common durability tests used as a quality control tool and acceptance criteria for OPC concretes.
SNPs were filtered using various quality control criteria as, build changes, call rate, compliance with Hardy Weinberg and minimum allele frequency (MAF) as described in Additional file 1.
Therefore, a total of 303 SNPs passed quality control criteria and were used in the subsequent studies.
In total, 15 of 16 arrays passed the appropriate quality control criteria as previously proposed [ 21].
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