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Define L as a length threshold.
Simple methods such as a length threshold [ 10] or more complex ones such as statistics-based models [ 9] may be used.
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The average depth was still larger than 100X even with a length threshold as long as 150 kb.
Given their tiny size, islets remain undetected by SWA, conventional CGI finders [ 2, 21, 36- 40], as all these programs share a length threshold above 200, or even 500 bp.
One of the most interesting classes is the long ncRNAs (lncRNAs) (Okazaki et al. 2002; Carninci et al. 2005; Mattick and Makunin 2006; Mercer et al. 2009), which are typically defined as transcribed RNA fragments exceeding a length threshold of 200 bp (Amaral et al. 2011; Brown et al. 2012; Kapusta et al. 2013).
As shown in Figure 5, with a length threshold of 90%, the transcript coverage in L_RNA_scaffolder is higher than that in any other scaffolder and is close to the complete human genome.
Lee, D. Y. & McMurray, C. T. Trinucleotide expansion in disease: why is there a length threshold?
For example, GERMLINE is a method using a length threshold that builds up a dictionary with chunks of haplotypes and IBD segments are spotted in accordance with a minimal length and with some flexibility as genotyping errors might be present.
We used a length threshold of 200 nucleotides to select novel long non-coding RNAs, as in ENCODE annotations (Djebali et al., 2012).
ISI [ 54] was used taking the initial embl record file corresponding to the S. meliloti chromosome (AL591688) as an input, and applying an IGR length threshold of 7 bp.
3991 n = > 63 Thus, to set the probability of a random ORF occurring at below 5%, 63 was selected as ORF length threshold.
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