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Mappability does not change as a function of sequencing technology, but only as a function of read length and the genome the reads are mapped against; And non-hydrolysis and contamination with pre-mRNA are independent of platform as well since they precede the step of deep-sequencing.
An analysis of SSR frequency/density as a function of sequencing direction indicated that the SSR frequency/density was higher for 5′ EST assembly than for 3′ assembly (Additional file 9: Figure S4).
They were used to determine the TP rates and assess variations as a function of sequencing depth, the MAF, and the P value obtained with the variant calling software VarScan (table 1).
The first data set was used to test performance as a function of sequencing coverage.
Pearson correlations (r) for the regions are plotted as a function of sequencing depth.
Rarefaction analysis is commonly used in ecological research defining species richness as a function of sequencing effort.
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Table 3 Comparison of code lengths as a function of sequence length.
Glass transitions of copolymers have been analysed as a function of sequence distribution and their values compared to the theoretical ones derived using Johnston's equation.
The structure of xylose reductase, combined with others in the superfamily provides an opportunity to examine and compare structural divergence as a function of sequence homology.
We use a tight-binding model to investigate the transmissivity, Lyapunov coefficient and localization length of DNA, including periodic poly(G poly(C), quasiperiodic Fibonacci polyGC and random sequences, as a function of sequence length and temperature.
Figure 5 is plot of the number of decoys at various cut-off values as a function of sequence length.
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