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There have been at least two investigations of the likelihood of repeated adaptive evolution as a function of evolutionary time.
On the whole, this decline of conservation appeared exponential as a function of evolutionary distance and did not necessarily always depend on time of divergence alone.
To sum, the expression of retrogenes and parental genes tend to be positively correlated, and this correlation degrades as a function of evolutionary time, as measured by dS.
A final point about cutoff values is that they are expected to increase as a function of evolutionary distance between the species being compared.
We estimated the frequency of inferred HGTs as a function of evolutionary distance by combining two versions of the reference phylogeny.
It has been demonstrated that the phenotypic diversity of a gene family is controlled by selection as a function of evolutionary fitness [ 32].
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Figure 3 illustrates the changes of PCs as a function of the evolutionary age of the gene.
We also investigated the performance of INTREPID as a function of the evolutionary divergence of the protein family.
These observations provide a clue that edgetic perturbation may act as a function of protein evolutionary rates of SHD, SPD, and ND genes.
We plotted each protein family of this "simplified" cadhesome as a function of its implied evolutionary age, i.e. in what phylum a representative analogous protein first appeared (Fig. 4).
The 179 protein families of groups A and B for which the trees had been reconstructed with ≥ 80% confidence were then plotted as a function of normalized pairwise evolutionary distances.
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