Sentence examples for as a default parameter from inspiring English sources

For this reason, we adopted 10-kb resolution as a default parameter to obtain smoother contact profiles.

In this study, an intermediate cell plating density (30,000 35,000 cells cm−2) was selected as a default culture parameter unless otherwise noted.

Thus, 3.0 Å is set as the default parameter by bSiteFinder in Optimized Multiple-Templates Clustering.

Therefore, we have used the Cα RMSD as the default parameter to measure the accuracy of generated models in this study, as used in PEP-FOLD [44].

(a) A representative 3D model of a RRM domain constructed using PfPABP3 (PF3D7_0923900) as a query and PDBID: 2jwn as a template using default parameters as described in the Materials and Methods section.

(A ) The default parameter set is as in Figure 2 figure supplement 3.

In the analyses below we take AVES = 0.3 and AVEI = 0.8 as default parameter values [16].

The parameter set with the lowest score (0.219) was chosen as default parameter set for antaRNA and was used for all following comparisons.

Reads were mapped against the Arabidopsis thaliana genome (v. TAIR10) using TopHat (v. 2.0.5; [ 75]) with as default parameter settings: --no-mixed, --no-discordant, -M, -g 1, --min-intron-length 50, --max-intron-length 11000.

as well as to view default parameters and change them if necessary.

HECT amino acid sequences were retrieved with a HMMER search, using the HMM profile of the Pfam HECT domain entry (PF00632) as a query, the default parameters and an inclusive E value of 0.05.