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By a first series of BLAST-searches in NCBI databases (nr/nt), Tu-CAS homologues could not be found outside Lepidoptera even though the genomic data of many other arthropods are present in NCBI.
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Annelids possess a coelom, which in arthropods is present only in the embryo.
This shows the MSH4 and MSH5 loss in Drosophila is not widespread in arthropods since orthologs are present in D. pulex and in other insects (Aedes, Anopheles and Apis).
In contrast, most of the helices found in arthropod rrnS genes are present in Steganacarus, but helices 7 and 8 are absent.
Nevertheless, the rate of assembly failure can be estimated by calculating the percentage of conserved single-copy arthropod genes that are present in multiple copies in the A. americanum transcriptome.
The immature and adult arthropod collections are presented in Table 1.
Here we show that achaete-scute homologue (ASH) and ase-like genes are present in arthropods other than insects.
Orthologous genes for each of three fly GATA456 genes – Serpent, GATAe, and Pannier – are present throughout arthropods.
In accordance with other arthropods, overlapping protein-coding genes are present in both G. marmoratus and O. asiaticus mitochondrial genomes; a 7-bp overlap exists not only between atp8 and atp6 but also between nad4L and nad4.
Interestingly, E78 and HR83, which are present in other arthropods, were absent from the genomes of T. japonicus and two congeneric copepod species (T. japonicus and Tigriopus californicus), suggesting copepod lineage-specific gene loss.
In total, 44 of the 141 (∼31%) newly detected Tribolium miRNAs are present in other arthropods but not present in dipterans (fig. 1 A ); half of these (23) are conserved in other invertebrates.
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