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In order to determine how different the two arrays were from each other, we created a single sequence of all the peptide substrates on the 1024 array, separating each by ten gaps (the letter 'X' was used to create gaps).
The microarray kit, equipment and software used for these arrays were from Agilent Technologies.
Cohorts for Affymetrix arrays were from non-diabetic individuals undergoing bariatric surgery, as previously described [ 31].
Atlas human cancer cDNA expression arrays were from Clontech (Ozyme, Saint Quentin Yvelines, France).
This accuracy was the same whether the training set arrays were from the same or different batch than the test set.
The microarray data, generated using Affymetrix GeneChip Rice Genome Arrays, were from our previous report [ 26] and the data were released under accession number GSE8380 of the Gene Expression Omnibus (GEO) database http://www.ncbi.nlm.nih.gov/geo.nih.gov/geo
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The annotated miRNAs in both the rat and mouse arrays are from the mir-467 family.
The samples hybridized to U133 Plus Arrays are from a series evaluating the effect of starting RNA quantity.
The interpreted factor arrays are, from now on, referred to as 'accounts' to reflect the change from a statistical analysis to a qualitative interpretation.
The consensus sequences of the probe sets on the GeneChip Medicago Genome Array were from Affymetrix.
RayBio Human Inflammation Antibody Array III and Matrix Metalloproteinase Antibody Array were from Raybiotech (Norcross, GA, USA).
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