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All-against-all protein product identity scores were produced using the Belvu programme [ 68], and reformatted into symmetrical square arrays of sequence identity percentage values (one for each cleavage product) represented as greyscale bitmaps in Figures 2B and 2C.
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Similar to promoters, enhancers harbor arrays of sequences that are recognized by multiple transcription factors (TFs), but unlike promoters, enhancers can activate transcription independent of their location, distance, or orientation with respect to the transcription start site (TSS) of each gene (reviewed in refs. 1– 4).
The promoter sequences generated in 117 individuals showed a rich array of sequence elements known to be involved in transcription regulation.
GenomeScanner is designed to read all DNA sequence files (in FASTA format) in a directory, create an array of sequence contig filenames, then process each sequence file base-by-base to identify sequences that match a particular profile.
However some sequences required hand sorting due to the wide array of sequence types and annotations.
We measured compression performance on the diverse array of sequence files listed in Table 1.
This adaptation requires a vast array of sequence, structural and physiological adjustments.
The array of sequence variants was used to determine the patient's haplogroup.
The array of sequence motifs and positions was loaded into a second program, followed by the nucleotide-only reference sequence.
By combining data from BSA and exon capture sequencing, we can sift through the large array of sequence variations to identify a region containing the mutant gene.
Ideally, a pair of BAC-end sequences assigned to each BAC in the physical map will provide a robust array of Sequence Tagged Sites (STS) for draft genome anchoring, genome exploitation, etc.
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